STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ17061.1Surface protein. (326 aa)    
Predicted Functional Partners:
SFO93819.1
DNA translocase FtsK.
    
 
 0.902
SFP32246.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
   
   0.737
SFP86214.1
Subtilase family protein.
  
 0.663
SFO91345.1
Hypothetical protein.
  
 0.595
SFP55571.1
Subtilase family protein; Belongs to the peptidase S8 family.
  
 0.595
SFQ16621.1
Response regulator receiver domain-containing protein.
  
 
 0.510
SFP27759.1
Acyl carrier protein.
   
   0.509
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
   0.509
SFQ20299.1
Acyl carrier protein.
   
   0.509
SFQ17082.1
PIF1-like helicase.
       0.493
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.