STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ18792.1Predicted TIM-barrel enzyme. (582 aa)    
Predicted Functional Partners:
SFP63136.1
Hypothetical protein.
 
 0.923
SFP18492.1
PAS domain S-box-containing protein.
  
 0.919
SFP42609.1
Signal transduction histidine kinase.
  
 0.918
SFP07975.1
Signal transduction histidine kinase.
  
 0.908
SFP14370.1
PAS/PAC sensor hybrid histidine kinase.
  
 0.908
SFP47052.1
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor.
  
 0.908
SFP94315.1
Adenylate cyclase.
  
 0.900
SFQ10214.1
PAS domain S-box-containing protein.
   
 0.895
SFP97971.1
PAS fold-containing protein.
  
 0.859
SFQ21980.1
PAS domain S-box-containing protein.
  
 0.859
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.