STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ24627.1Ion channel. (68 aa)    
Predicted Functional Partners:
SFQ23194.1
Protein of unknown function.
  
     0.664
SFP24599.1
PRC-barrel domain-containing protein.
  
     0.593
SFP94411.1
Sulfate permease, SulP family.
    
  0.588
SFQ24649.1
Protein of unknown function.
       0.570
SFQ24669.1
Hypothetical protein.
       0.570
SFP87051.1
Mercuric ion transport protein.
  
     0.556
SFP91780.1
5-formyltetrahydrofolate cyclo-ligase family protein.
  
     0.534
SFP34423.1
Putative salt-induced outer membrane protein.
  
     0.513
SFO92543.1
Sporulation protein YlmC, PRC-barrel domain family.
  
     0.508
SFO86819.1
Putative membrane protein.
  
     0.490
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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