STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ27174.1MerR, DNA binding. (73 aa)    
Predicted Functional Partners:
SFP89358.1
Glutamate synthase (NADPH) large subunit.
     
 0.821
SFQ27194.1
Small multidrug resistance family-3 protein.
       0.793
SFP06370.1
DnaJ domain-containing protein.
 
 
 0.673
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.666
SFQ27209.1
Transglutaminase-like superfamily protein.
 
     0.633
SFP17128.1
methylmalonyl-CoA mutase.
     
 0.628
SFP36414.1
(R)-ethylmalonyl-CoA mutase.
     
 0.628
SFO96291.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.610
SFP76055.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.610
dnaJ
Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...]
  
 
 0.602
Your Current Organism:
Tranquillimonas alkanivorans
NCBI taxonomy Id: 441119
Other names: DSM 19547, JCM 14836, T. alkanivorans, Tranquillimonas alkanivorans Harwati et al. 2008, alpha proteobacterium A34, strain A34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.