STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaFUnannotated protein; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (437 aa)    
Predicted Functional Partners:
paaD
Unannotated protein.
 
  
 0.951
BG454_07685
Unannotated protein.
    
  0.903
BG454_00155
Unannotated protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.819
BG454_00140
Unannotated protein.
 
     0.815
BG454_01950
Unannotated protein.
 
 
 0.815
BG454_01945
Unannotated protein.
 
 
 0.796
paaI
Unannotated protein.
 
 
 0.787
BG454_01930
Unannotated protein.
 
 
 0.783
paaJ
Unannotated protein.
 
  
 0.781
BG454_01925
Unannotated protein.
  
 
 0.689
Your Current Organism:
Rhodobaca barguzinensis
NCBI taxonomy Id: 441209
Other names: DSM 19920, R. barguzinensis, Rhodobaca barguzinensis Boldareva et al. 2009, VKM B-2406, strain alga-05, strain alga05
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.