STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG454_03315Unannotated protein. (434 aa)    
Predicted Functional Partners:
BG454_03320
Unannotated protein.
 
   
 0.965
xylF
Unannotated protein.
 
     0.872
BG454_03305
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.807
BG454_03300
Unannotated protein.
  
 0.791
BG454_03325
Unannotated protein.
  
    0.654
xylB
Unannotated protein.
 
  
 0.643
xylA
Unannotated protein; Belongs to the xylose isomerase family.
 
   
 0.624
BG454_18135
Unannotated protein; Belongs to the mannose-6-phosphate isomerase type 2 family.
     
 0.555
BG454_15730
Unannotated protein.
  
    0.549
BG454_13735
Unannotated protein.
 
  
 0.532
Your Current Organism:
Rhodobaca barguzinensis
NCBI taxonomy Id: 441209
Other names: DSM 19920, R. barguzinensis, Rhodobaca barguzinensis Boldareva et al. 2009, VKM B-2406, strain alga-05, strain alga05
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.