BG454_02980 protein (Rhodobaca barguzinensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BG454_02980

Unannotated protein. (345 aa)

Predicted Functional Partners:

BG454_02985

0.999

BG454_02965

0.988

BG454_03015

0.971

BG454_03020

0.965

BG454_15990

0.931

bchI

0.929

BG454_03010

0.916

BG454_10105

0.908

BG454_14015

0.906

BG454_02990

0.901

Your Current Organism:

Rhodobaca barguzinensis

NCBI taxonomy Id: 441209
Other names: DSM 19920, R. barguzinensis, Rhodobaca barguzinensis Boldareva et al. 2009, VKM B-2406, strain alga-05, strain alga05

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BG454_02965	BG454_02980	GCA_001870665_00631	GCA_001870665_00628	Unannotated protein.	Unannotated protein.	0.988
BG454_02965	BG454_02985	GCA_001870665_00631	GCA_001870665_00627	Unannotated protein.	Unannotated protein.	0.684
BG454_02965	BG454_02990	GCA_001870665_00631	GCA_001870665_00626	Unannotated protein.	Unannotated protein.	0.584
BG454_02965	BG454_03010	GCA_001870665_00631	GCA_001870665_00622	Unannotated protein.	Unannotated protein.	0.830
BG454_02965	BG454_03015	GCA_001870665_00631	GCA_001870665_00621	Unannotated protein.	Unannotated protein.	0.778
BG454_02965	BG454_03020	GCA_001870665_00631	GCA_001870665_00620	Unannotated protein.	Unannotated protein; Belongs to the FPP/GGPP synthase family.	0.983
BG454_02965	BG454_10105	GCA_001870665_00631	GCA_001870665_01799	Unannotated protein.	Unannotated protein.	0.861
BG454_02965	BG454_15990	GCA_001870665_00631	GCA_001870665_02980	Unannotated protein.	Unannotated protein; Belongs to the FPP/GGPP synthase family.	0.433
BG454_02965	bchI	GCA_001870665_00631	GCA_001870665_00625	Unannotated protein.	Unannotated protein; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.	0.946
BG454_02980	BG454_02965	GCA_001870665_00628	GCA_001870665_00631	Unannotated protein.	Unannotated protein.	0.988
BG454_02980	BG454_02985	GCA_001870665_00628	GCA_001870665_00627	Unannotated protein.	Unannotated protein.	0.999
BG454_02980	BG454_02990	GCA_001870665_00628	GCA_001870665_00626	Unannotated protein.	Unannotated protein.	0.901
BG454_02980	BG454_03010	GCA_001870665_00628	GCA_001870665_00622	Unannotated protein.	Unannotated protein.	0.916
BG454_02980	BG454_03015	GCA_001870665_00628	GCA_001870665_00621	Unannotated protein.	Unannotated protein.	0.971
BG454_02980	BG454_03020	GCA_001870665_00628	GCA_001870665_00620	Unannotated protein.	Unannotated protein; Belongs to the FPP/GGPP synthase family.	0.965
BG454_02980	BG454_10105	GCA_001870665_00628	GCA_001870665_01799	Unannotated protein.	Unannotated protein.	0.908
BG454_02980	BG454_14015	GCA_001870665_00628	GCA_001870665_02586	Unannotated protein.	Unannotated protein; Belongs to the FPP/GGPP synthase family.	0.906
BG454_02980	BG454_15990	GCA_001870665_00628	GCA_001870665_02980	Unannotated protein.	Unannotated protein; Belongs to the FPP/GGPP synthase family.	0.931
BG454_02980	bchI	GCA_001870665_00628	GCA_001870665_00625	Unannotated protein.	Unannotated protein; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.	0.929
BG454_02985	BG454_02965	GCA_001870665_00627	GCA_001870665_00631	Unannotated protein.	Unannotated protein.	0.684