Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BG454_02250 | BG454_02255 | GCA_001870665_00776 | GCA_001870665_00775 | Unannotated protein. | Unannotated protein; Belongs to the shikimate dehydrogenase family. | 0.783 |
BG454_02250 | BG454_02260 | GCA_001870665_00776 | GCA_001870665_00774 | Unannotated protein. | Unannotated protein. | 0.619 |
BG454_02250 | BG454_02295 | GCA_001870665_00776 | GCA_001870665_00767 | Unannotated protein. | Unannotated protein. | 0.823 |
BG454_02255 | BG454_02250 | GCA_001870665_00775 | GCA_001870665_00776 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein. | 0.783 |
BG454_02255 | BG454_02260 | GCA_001870665_00775 | GCA_001870665_00774 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein. | 0.722 |
BG454_02255 | BG454_02295 | GCA_001870665_00775 | GCA_001870665_00767 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein. | 0.889 |
BG454_02255 | aroA | GCA_001870665_00775 | GCA_001870665_01359 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.818 |
BG454_02255 | aroB | GCA_001870665_00775 | GCA_001870665_02339 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.842 |
BG454_02255 | aroC | GCA_001870665_00775 | GCA_001870665_00925 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.836 |
BG454_02255 | aroE | GCA_001870665_00775 | GCA_001870665_00903 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.922 |
BG454_02255 | aroK | GCA_001870665_00775 | GCA_001870665_02340 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.990 |
BG454_02255 | aroQ | GCA_001870665_00775 | GCA_001870665_00577 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.943 |
BG454_02255 | nadD | GCA_001870665_00775 | GCA_001870665_01581 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.762 |
BG454_02260 | BG454_02250 | GCA_001870665_00774 | GCA_001870665_00776 | Unannotated protein. | Unannotated protein. | 0.619 |
BG454_02260 | BG454_02255 | GCA_001870665_00774 | GCA_001870665_00775 | Unannotated protein. | Unannotated protein; Belongs to the shikimate dehydrogenase family. | 0.722 |
BG454_02260 | BG454_02295 | GCA_001870665_00774 | GCA_001870665_00767 | Unannotated protein. | Unannotated protein. | 0.618 |
BG454_02295 | BG454_02250 | GCA_001870665_00767 | GCA_001870665_00776 | Unannotated protein. | Unannotated protein. | 0.823 |
BG454_02295 | BG454_02255 | GCA_001870665_00767 | GCA_001870665_00775 | Unannotated protein. | Unannotated protein; Belongs to the shikimate dehydrogenase family. | 0.889 |
BG454_02295 | BG454_02260 | GCA_001870665_00767 | GCA_001870665_00774 | Unannotated protein. | Unannotated protein. | 0.618 |
BG454_02295 | aroQ | GCA_001870665_00767 | GCA_001870665_00577 | Unannotated protein. | Unannotated protein; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.496 |
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