Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BG454_02040 | BG454_10095 | GCA_001870665_00822 | GCA_001870665_01797 | Unannotated protein. | Unannotated protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.509 |
BG454_02040 | BG454_18595 | GCA_001870665_00822 | GCA_001870665_00355 | Unannotated protein. | Unannotated protein. | 0.450 |
BG454_02040 | GCA_001870665_00821 | GCA_001870665_00822 | GCA_001870665_00821 | Unannotated protein. | Unannotated protein. | 0.891 |
BG454_02040 | ilvC | GCA_001870665_00822 | GCA_001870665_02710 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.407 |
BG454_02040 | ilvD | GCA_001870665_00822 | GCA_001870665_00820 | Unannotated protein. | Unannotated protein; Belongs to the IlvD/Edd family. | 0.891 |
BG454_02040 | leuA | GCA_001870665_00822 | GCA_001870665_02175 | Unannotated protein. | Unannotated protein; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. | 0.509 |
BG454_02040 | leuC | GCA_001870665_00822 | GCA_001870665_00330 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.414 |
BG454_08875 | BG454_10095 | GCA_001870665_01552 | GCA_001870665_01797 | Unannotated protein. | Unannotated protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.961 |
BG454_08875 | BG454_18595 | GCA_001870665_01552 | GCA_001870665_00355 | Unannotated protein. | Unannotated protein. | 0.450 |
BG454_08875 | GCA_001870665_00821 | GCA_001870665_01552 | GCA_001870665_00821 | Unannotated protein. | Unannotated protein. | 0.598 |
BG454_08875 | ilvC | GCA_001870665_01552 | GCA_001870665_02710 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.446 |
BG454_08875 | ilvD | GCA_001870665_01552 | GCA_001870665_00820 | Unannotated protein. | Unannotated protein; Belongs to the IlvD/Edd family. | 0.958 |
BG454_08875 | ilvE | GCA_001870665_01552 | GCA_001870665_00684 | Unannotated protein. | Unannotated protein; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.924 |
BG454_08875 | leuA | GCA_001870665_01552 | GCA_001870665_02175 | Unannotated protein. | Unannotated protein; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. | 0.972 |
BG454_08875 | leuC | GCA_001870665_01552 | GCA_001870665_00330 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.453 |
BG454_08875 | panB | GCA_001870665_01552 | GCA_001870665_00806 | Unannotated protein. | Unannotated protein; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | 0.917 |
BG454_10095 | BG454_02040 | GCA_001870665_01797 | GCA_001870665_00822 | Unannotated protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Unannotated protein. | 0.509 |
BG454_10095 | BG454_08875 | GCA_001870665_01797 | GCA_001870665_01552 | Unannotated protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Unannotated protein. | 0.961 |
BG454_10095 | GCA_001870665_00821 | GCA_001870665_01797 | GCA_001870665_00821 | Unannotated protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Unannotated protein. | 0.546 |
BG454_10095 | ilvC | GCA_001870665_01797 | GCA_001870665_02710 | Unannotated protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.801 |
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