STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG454_08660Unannotated protein; HflC and HflK could regulate a protease. (334 aa)    
Predicted Functional Partners:
hflK
Unannotated protein; HflC and HflK could encode or regulate a protease.
 
 0.999
BG454_03735
Unannotated protein; Belongs to the AAA ATPase family.
  
 0.890
ftsH
Unannotated protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.890
BG454_18505
Unannotated protein; Belongs to the AAA ATPase family.
  
 0.890
BG454_05150
Unannotated protein; Belongs to the AAA ATPase family.
  
 0.890
BG454_08655
Unannotated protein.
     
 0.853
BG454_08670
Unannotated protein.
  
 
 0.782
rpiA
Unannotated protein; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.749
BG454_08650
Unannotated protein; Belongs to the peptidase S1C family.
 
 
 0.691
BG454_04090
Unannotated protein; Belongs to the peptidase M16 family.
  
 0.577
Your Current Organism:
Rhodobaca barguzinensis
NCBI taxonomy Id: 441209
Other names: DSM 19920, R. barguzinensis, Rhodobaca barguzinensis Boldareva et al. 2009, VKM B-2406, strain alga-05, strain alga05
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.