STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG454_11945Unannotated protein. (185 aa)    
Predicted Functional Partners:
hemC
Unannotated protein; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
      0.885
BG454_11935
Unannotated protein.
       0.858
tsaB
Unannotated protein.
       0.858
BG454_10460
Unannotated protein.
 
 
 0.715
BG454_11930
Unannotated protein.
       0.692
BG454_15685
Unannotated protein; Belongs to the HesB/IscA family.
 
 
 0.646
BG454_13695
Unannotated protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.635
BG454_16645
Unannotated protein.
  
 
 0.635
BG454_11920
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
       0.617
nuoI
Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
  
 0.611
Your Current Organism:
Rhodobaca barguzinensis
NCBI taxonomy Id: 441209
Other names: DSM 19920, R. barguzinensis, Rhodobaca barguzinensis Boldareva et al. 2009, VKM B-2406, strain alga-05, strain alga05
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.