STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG454_12455Unannotated protein. (627 aa)    
Predicted Functional Partners:
BG454_08730
Unannotated protein.
    
 
 0.792
BG454_14565
Unannotated protein.
 
 
 0.681
BG454_17595
Unannotated protein.
 
 
 0.677
BG454_14585
Unannotated protein.
 
 
 0.649
rplF
Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.647
BG454_08705
Unannotated protein.
 
 
 0.618
BG454_12450
Unannotated protein.
 
     0.604
BG454_06195
Unannotated protein.
  
    0.595
BG454_02850
Unannotated protein.
  
 
 0.592
BG454_08610
Unannotated protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.592
Your Current Organism:
Rhodobaca barguzinensis
NCBI taxonomy Id: 441209
Other names: DSM 19920, R. barguzinensis, Rhodobaca barguzinensis Boldareva et al. 2009, VKM B-2406, strain alga-05, strain alga05
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.