STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG454_15295Unannotated protein. (207 aa)    
Predicted Functional Partners:
BG454_15290
Unannotated protein.
 
 0.999
BG454_15285
Unannotated protein.
 
 0.998
BG454_15300
Unannotated protein.
 
   
 0.953
BG454_16730
Unannotated protein.
  
  
 0.828
BG454_15305
Unannotated protein.
       0.797
BG454_16725
Unannotated protein.
  
  
 0.752
BG454_06060
Unannotated protein; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
 
   
 0.642
cobA
Unannotated protein; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
  
  
 0.642
BG454_15275
Unannotated protein.
       0.412
BG454_15280
Unannotated protein.
       0.412
Your Current Organism:
Rhodobaca barguzinensis
NCBI taxonomy Id: 441209
Other names: DSM 19920, R. barguzinensis, Rhodobaca barguzinensis Boldareva et al. 2009, VKM B-2406, strain alga-05, strain alga05
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.