STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG454_16390Unannotated protein. (219 aa)    
Predicted Functional Partners:
BG454_16385
Unannotated protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
 
   
 0.967
BG454_16380
Unannotated protein.
       0.680
BG454_16375
Unannotated protein.
       0.642
BG454_13650
Unannotated protein.
  
     0.527
BG454_14235
Unannotated protein.
  
     0.520
BG454_05595
Unannotated protein.
  
     0.500
nadC
Unannotated protein; Belongs to the NadC/ModD family.
       0.482
BG454_16400
Unannotated protein; Catalyzes the oxidation of L-aspartate to iminoaspartate.
       0.482
nadA
Unannotated protein; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
       0.482
BG454_09295
Unannotated protein.
  
     0.469
Your Current Organism:
Rhodobaca barguzinensis
NCBI taxonomy Id: 441209
Other names: DSM 19920, R. barguzinensis, Rhodobaca barguzinensis Boldareva et al. 2009, VKM B-2406, strain alga-05, strain alga05
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.