STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG454_17780Unannotated protein. (372 aa)    
Predicted Functional Partners:
rpsN
Unannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.658
BG454_17775
Unannotated protein; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP; Belongs to the PRA-CH family.
     
 0.597
BG454_03460
Unannotated protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.558
BG454_17770
Unannotated protein.
       0.553
folE2
Unannotated protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.540
BG454_16730
Unannotated protein.
     
 0.507
rpmG
Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.498
rpmB
Unannotated protein; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.497
dksA
Unannotated protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.434
BG454_15830
Unannotated protein.
  
  
 0.434
Your Current Organism:
Rhodobaca barguzinensis
NCBI taxonomy Id: 441209
Other names: DSM 19920, R. barguzinensis, Rhodobaca barguzinensis Boldareva et al. 2009, VKM B-2406, strain alga-05, strain alga05
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.