STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114455942Ataxin-3-like. (382 aa)    
Predicted Functional Partners:
prkn
Parkin RBR E3 ubiquitin protein ligase.
    
 0.983
rps27a
Ribosomal protein S27a.
    
 0.963
LOC114475174
polyubiquitin-C.
    
 0.960
LOC114461594
Transitional endoplasmic reticulum ATPase-like.
   
 0.959
vcp
Valosin containing protein.
   
 0.959
spata5l1
Spermatogenesis associated 5 like 1.
   
 0.948
SPATA5
Spermatogenesis associated 5.
   
 0.948
rad23a
RAD23 homolog A, nucleotide excision repair protein.
    
 0.935
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
    
 0.935
ENSGWIP00000032604
Ubiquitin B.
    
 0.934
Your Current Organism:
Gouania willdenowi
NCBI taxonomy Id: 441366
Other names: G. willdenowi, Lepadogaster willdenowi, blunt-snouted clingfish, chafaroccas
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.