STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114469146Synphilin-1-like. (712 aa)    
Predicted Functional Partners:
prkn
Parkin RBR E3 ubiquitin protein ligase.
    
 0.962
LOC114473821
Alpha-synuclein-like.
    
 0.907
LOC114477055
Synuclein-like.
    
 0.846
LOC114481066
Synuclein-like.
    
 0.846
ift81
Intraflagellar transport 81.
    
 0.812
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.805
ift88
Intraflagellar transport 88.
   
 0.772
ift52
Intraflagellar transport 52.
    
 0.767
LOC114465577
E3 ubiquitin-protein ligase Siah1.
    
 0.764
ift57
Intraflagellar transport 57.
    
 0.753
Your Current Organism:
Gouania willdenowi
NCBI taxonomy Id: 441366
Other names: G. willdenowi, Lepadogaster willdenowi, blunt-snouted clingfish, chafaroccas
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.