CMU_005070 protein (Cryptosporidium muris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CMU_005070

Uncharacterized protein. (838 aa)

Predicted Functional Partners:

CMU_009950

0.651

CMU_009650

0.553

CMU_011430

0.529

CMU_034710

0.487

CMU_003370

0.472

CMU_007410

0.461

CMU_006530

0.439

CMU_007860

0.413

CMU_018410

0.400

Your Current Organism:

Cryptosporidium muris

NCBI taxonomy Id: 441375
Other names: C. muris RN66, Cryptosporidium muris RN66

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMU_003370	CMU_005070	B6AJW6	B6AH89	DnaK family protein.	Uncharacterized protein.	0.472
CMU_003370	CMU_006530	B6AJW6	B6AHN5	DnaK family protein.	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	0.999
CMU_003370	CMU_009950	B6AJW6	B6AE62	DnaK family protein.	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	0.985
CMU_003370	CMU_011430	B6AJW6	B6AJ03	DnaK family protein.	Trehalose-6-phosphate synthase domain-containing protein.	0.457
CMU_003370	CMU_018410	B6AJW6	B6AD80	DnaK family protein.	DnaK family protein.	0.760
CMU_003370	CMU_034710	B6AJW6	B6AFU4	DnaK family protein.	Chaperone clpB family protein.	0.963
CMU_005070	CMU_003370	B6AH89	B6AJW6	Uncharacterized protein.	DnaK family protein.	0.472
CMU_005070	CMU_006530	B6AH89	B6AHN5	Uncharacterized protein.	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	0.439
CMU_005070	CMU_007410	B6AH89	B6ADG0	Uncharacterized protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.461
CMU_005070	CMU_007860	B6AH89	B6ADK4	Uncharacterized protein.	Folate/biopterin transporter family protein.	0.413
CMU_005070	CMU_009650	B6AH89	B6AE32	Uncharacterized protein.	Dynein light chain.	0.553
CMU_005070	CMU_009950	B6AH89	B6AE62	Uncharacterized protein.	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	0.651
CMU_005070	CMU_011430	B6AH89	B6AJ03	Uncharacterized protein.	Trehalose-6-phosphate synthase domain-containing protein.	0.529
CMU_005070	CMU_018410	B6AH89	B6AD80	Uncharacterized protein.	DnaK family protein.	0.400
CMU_005070	CMU_034710	B6AH89	B6AFU4	Uncharacterized protein.	Chaperone clpB family protein.	0.487
CMU_006530	CMU_003370	B6AHN5	B6AJW6	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	DnaK family protein.	0.999
CMU_006530	CMU_005070	B6AHN5	B6AH89	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.439
CMU_006530	CMU_009950	B6AHN5	B6AE62	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	0.932
CMU_006530	CMU_011430	B6AHN5	B6AJ03	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	Trehalose-6-phosphate synthase domain-containing protein.	0.515
CMU_006530	CMU_018410	B6AHN5	B6AD80	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	DnaK family protein.	0.859