STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mpop_1200PFAM: protein of unknown function DUF442; KEGG: mex:Mext_1253 protein of unknown function DUF442. (142 aa)    
Predicted Functional Partners:
Mpop_4149
PFAM: beta-lactamase domain protein; KEGG: xau:Xaut_2892 beta-lactamase domain protein.
     0.863
Mpop_0115
PFAM: beta-lactamase domain protein; KEGG: xau:Xaut_2892 beta-lactamase domain protein.
     0.792
Mpop_4665
PFAM: beta-lactamase domain protein; KEGG: gdi:GDI3833 hypothetical protein.
     0.693
Mpop_1199
KEGG: mex:Mext_1252 hypothetical protein.
       0.514
Your Current Organism:
Methylorubrum populi
NCBI taxonomy Id: 441620
Other names: M. populi BJ001, Methylobacterium populi BJ001, Methylobacterium sp. BJ001, Methylorubrum populi BJ001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.