STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mpop_1513KEGG: sma:SAV3459 hypothetical protein. (526 aa)    
Predicted Functional Partners:
Mpop_1510
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: mex:Mext_1510 VWA containing CoxE family protein.
 
     0.952
Mpop_1511
KEGG: amr:AM1_4013 hypothetical protein.
 
     0.952
Mpop_1512
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: mex:Mext_1512 ATPase associated with various cellular activities AAA_5.
 
     0.952
Mpop_1514
PFAM: zinc finger SWIM domain protein; KEGG: mex:Mext_1514 zinc finger SWIM domain protein.
     0.952
Mpop_2962
PFAM: WD-40 repeat protein; cytochrome c class I; KEGG: mex:Mext_2844 WD-40 repeat protein.
  
 
 0.938
Mpop_2291
SMART: WD-40 repeat protein; KEGG: mex:Mext_2336 WD-40 repeat protein.
    
 0.928
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
  0.842
Mpop_2939
PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mex:Mext_2821 helicase domain protein.
    
  0.839
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.835
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.830
Your Current Organism:
Methylorubrum populi
NCBI taxonomy Id: 441620
Other names: M. populi BJ001, Methylobacterium populi BJ001, Methylobacterium sp. BJ001, Methylorubrum populi BJ001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.