STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mpop_2095KEGG: mex:Mext_2135 hypothetical protein. (138 aa)    
Predicted Functional Partners:
Mpop_5080
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mex:Mext_4563 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
  
    0.668
Mpop_3886
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: ret:RHE_PD00022 hypothetical protein.
  
  
 0.647
Mpop_3027
PFAM: protein of unknown function DUF1328; KEGG: mex:Mext_2903 protein of unknown function DUF1328.
  
    0.637
Mpop_3354
PFAM: protein of unknown function DUF1328; KEGG: mex:Mext_3158 protein of unknown function DUF1328.
  
    0.637
Mpop_4322
PFAM: protein of unknown function DUF1328; KEGG: mex:Mext_3862 protein of unknown function DUF1328.
  
    0.637
Mpop_2096
PFAM: CsbD family protein; KEGG: mex:Mext_2136 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
       0.479
Your Current Organism:
Methylorubrum populi
NCBI taxonomy Id: 441620
Other names: M. populi BJ001, Methylobacterium populi BJ001, Methylobacterium sp. BJ001, Methylorubrum populi BJ001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.