STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mpop_3084PFAM: TRAG family protein; KEGG: pla:Plav_3539 TraG family protein. (661 aa)    
Predicted Functional Partners:
Mpop_3085
KEGG: atc:AGR_L_19 hypothetical protein.
 
     0.952
Mpop_3083
KEGG: xau:Xaut_0588 hypothetical protein.
 
   
 0.947
Mpop_3095
PFAM: conjugation TrbI family protein; KEGG: xau:Xaut_2995 conjugation TrbI family protein.
 
 
 
 0.932
Mpop_3089
SMART: AAA ATPase; KEGG: xau:Xaut_3001 AAA ATPase.
 
  
 0.909
Mpop_3087
PFAM: Conjugal transfer protein TrbC; KEGG: xau:Xaut_3003 conjugal transfer protein TrbC.
 
   
 0.907
Mpop_3094
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: xau:Xaut_2996 P-type conjugative transfer protein TrbG.
 
   
 0.904
Mpop_3090
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: xau:Xaut_3000 P-type conjugative transfer protein TrbJ.
 
   
 0.900
Mpop_5145
KEGG: nwi:Nwi_0730 type IV secretory pathway VirD4 components.
     
  0.900
Mpop_3086
TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: xau:Xaut_3004 P-type conjugative transfer ATPase TrbB.
 
   
 0.889
Mpop_3092
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: xau:Xaut_2998 P-type conjugative transfer protein TrbL.
 
   
 0.887
Your Current Organism:
Methylorubrum populi
NCBI taxonomy Id: 441620
Other names: M. populi BJ001, Methylobacterium populi BJ001, Methylobacterium sp. BJ001, Methylorubrum populi BJ001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.