Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACL_0214 | ACL_0215 | ACL_0214 | ACL_0215 | degV domain protein. | DAHP synthase. | 0.416 |
ACL_0214 | ACL_0222 | ACL_0214 | ACL_0222 | degV domain protein. | Conserved membrane-anchored protein; This protein contains four predicted N-terminal transmembrane helices. | 0.416 |
ACL_0214 | aroA | ACL_0214 | ACL_0218 | degV domain protein. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.416 |
ACL_0214 | aroB | ACL_0214 | ACL_0217 | degV domain protein. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.416 |
ACL_0214 | aroC | ACL_0214 | ACL_0221 | degV domain protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.416 |
ACL_0214 | aroE | ACL_0214 | ACL_0220 | degV domain protein. | Shikimate 5-dehydrogenase. | 0.416 |
ACL_0214 | aroH | ACL_0214 | ACL_0219 | degV domain protein. | Chorismate mutase. | 0.416 |
ACL_0214 | mscL | ACL_0214 | ACL_0213 | degV domain protein. | Large conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. | 0.785 |
ACL_0214 | tyrA | ACL_0214 | ACL_0216 | degV domain protein. | Prephenate dehydrogenase. | 0.416 |
ACL_0215 | ACL_0214 | ACL_0215 | ACL_0214 | DAHP synthase. | degV domain protein. | 0.416 |
ACL_0215 | ACL_0222 | ACL_0215 | ACL_0222 | DAHP synthase. | Conserved membrane-anchored protein; This protein contains four predicted N-terminal transmembrane helices. | 0.786 |
ACL_0215 | aroA | ACL_0215 | ACL_0218 | DAHP synthase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.957 |
ACL_0215 | aroB | ACL_0215 | ACL_0217 | DAHP synthase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.996 |
ACL_0215 | aroC | ACL_0215 | ACL_0221 | DAHP synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.877 |
ACL_0215 | aroE | ACL_0215 | ACL_0220 | DAHP synthase. | Shikimate 5-dehydrogenase. | 0.954 |
ACL_0215 | aroH | ACL_0215 | ACL_0219 | DAHP synthase. | Chorismate mutase. | 0.952 |
ACL_0215 | mscL | ACL_0215 | ACL_0213 | DAHP synthase. | Large conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. | 0.416 |
ACL_0215 | pheA | ACL_0215 | ACL_0562 | DAHP synthase. | Prephenate dehydratase. | 0.729 |
ACL_0215 | tyrA | ACL_0215 | ACL_0216 | DAHP synthase. | Prephenate dehydrogenase. | 0.956 |
ACL_0222 | ACL_0214 | ACL_0222 | ACL_0214 | Conserved membrane-anchored protein; This protein contains four predicted N-terminal transmembrane helices. | degV domain protein. | 0.416 |
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