Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACL_0664Hypothetical protein, containing N-terminal RDD domain; This protein contains three predicted transmembrane domains. (159 aa)    
Predicted Functional Partners:
ACL_0663
This protein contains four predicted transmembrane helices.
       0.781
ACL_1387
The S4 domain was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.
  
    0.635
ACL_0662
Hypothetical surface-anchored protein; This protein contains one predicted N-terminal transmembrane helix.
       0.428
ACL_0661
ABC-type transport system, ligand-binding component; This protein contains one predicted N-terminal transmembrane helix.
       0.426
ACL_0711
ABC-type transport system, ATP-binding and permease components; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
  
  
 0.424
ACL_0665
Pullulanase, surface-anchored protein; This protein contains one predicted N-terminal transmembrane helix; Belongs to the glycosyl hydrolase 13 family.
       0.410
ACL_0666
Hypothetical surface-anchored protein; This protein contains one predicted N-terminal transmembrane helix.
       0.410
Your Current Organism:
Acholeplasma laidlawii
NCBI taxonomy Id: 441768
Other names: A. laidlawii PG-8A, Acholeplasma laidlawii PG-8A, Acholeplasma laidlawii str. PG-8A, Acholeplasma laidlawii strain PG-8A
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