Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
N308_15712Sideroflexin-4. (155 aa)    
Predicted Functional Partners:
CCDC18
Coiled-coil domain-containing protein 18.
      
 0.595
PRR14L
Protein PRR14L.
    
 
 0.587
N308_08954
Transmembrane protein 186.
     
 0.583
SLC66A3
PQ-loop repeat-containing protein 3.
      
 0.578
N308_08996
Cytochrome c oxidase assembly protein COX15.
   
 
 0.574
SPG7
SPG7 matrix AAA peptidase subunit, paraplegin.
    
 
 0.554
N308_00572
Translocase of inner mitochondrial membrane domain-containing protein 1.
    
 
 0.501
EHBP1
EH domain-binding protein 1.
      
 0.496
YIPF4
Protein YIPF.
      
 0.488
PRADC1
Protease-associated domain-containing protein 1.
      
 0.488
Your Current Organism:
Struthio camelus
NCBI taxonomy Id: 441894
Other names: S. camelus australis, Struthio camelus australis
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