STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP4Ubiquitin specific peptidase 4. (912 aa)    
Predicted Functional Partners:
N308_04198
Polyubiquitin.
    
 0.841
SART3
Squamous cell carcinoma antigen recognized by T-cells 3.
    
 
 0.815
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.767
TGFBR1
Transforming growth factor beta receptor 1.
    
 0.762
SMURF2
E3 ubiquitin-protein ligase SMURF2.
    
 0.750
UBA52
Ubiquitin-60S ribosomal protein L40.
    
  0.737
SMAD7
Mothers against decapentaplegic 7.
    
 0.708
MYSM1
Histone H2A deubiquitinase MYSM1.
   
 
 0.679
N308_02498
Ubiquitin-40S ribosomal protein S27a.
    
 0.678
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.670
Your Current Organism:
Struthio camelus
NCBI taxonomy Id: 441894
Other names: S. camelus australis, Struthio camelus australis
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.