STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N308_10765E3 ubiquitin-protein ligase LNX. (511 aa)    
Predicted Functional Partners:
UBA52
Ubiquitin-60S ribosomal protein L40.
    
 0.734
N308_02498
Ubiquitin-40S ribosomal protein S27a.
    
  0.731
MAGI3
Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3.
    
 0.731
PRKCB
Protein kinase C beta type; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.
   
 0.678
PRKCA
Protein kinase C alpha type; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.
   
 0.678
CASK
Calcium/calmodulin dependent serine protein kinase.
   
 0.663
ENSSCUP00000019894
annotation not available
   
 0.663
MPP5
MAGUK p55 subfamily member 5; Belongs to the MAGUK family.
    
 0.662
MPP3
MAGUK p55 subfamily member 3.
    
 0.662
MPP7
MAGUK p55 subfamily member 7.
    
 0.662
Your Current Organism:
Struthio camelus
NCBI taxonomy Id: 441894
Other names: S. camelus australis, Struthio camelus australis
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