STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSTA_071990Ubiquitin fusion degradation protein UfdB, putative. (1082 aa)    
Predicted Functional Partners:
TSTA_092350
Ubiquitin-protein ligase Ufd4, putative.
   
 0.992
TSTA_120220
UV excision repair protein (RadW), putative.
   
 0.966
TSTA_063270
Cell division control protein Cdc48; Belongs to the AAA ATPase family.
   
 
 0.960
TSTA_046010
Ubiquitin fusion degradation protein Ufd1, putative.
    
 
 0.960
TSTA_021450
Endoplasmic reticulum and nuclear membrane proteinc Npl4, putative.
    
 
 0.957
TSTA_103630
OTU-like cysteine protease, putative.
    
 
 0.956
TSTA_117530
Cdc48-dependent protein degradation adaptor protein (Shp1), putative.
  
 
 
 0.944
TSTA_083430
Ubiquitin-like protein DskB, putative.
   
 0.928
TSTA_016310
Polarized growth protein (Boi2), putative.
   
 0.928
TSTA_121160
Ubiquitin fusion degradation protein (Ufd1), putative.
    
 
 0.926
Your Current Organism:
Talaromyces stipitatus
NCBI taxonomy Id: 441959
Other names: T. stipitatus ATCC 10500, Talaromyces stipitatus ATCC 10500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.