TSTA_073670 protein (Talaromyces stipitatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TSTA_073670

Uncharacterized protein. (668 aa)

Predicted Functional Partners:

TSTA_104160

0.922

TSTA_072020

0.918

TSTA_058770

0.917

TSTA_087620

0.891

TSTA_018630

0.891

TSTA_005090

0.876

TSTA_088360

0.874

TSTA_089590

0.872

TSTA_096530

0.868

TSTA_078040

0.865

Your Current Organism:

Talaromyces stipitatus

NCBI taxonomy Id: 441959
Other names: T. stipitatus ATCC 10500, Talaromyces stipitatus ATCC 10500

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TSTA_005090	TSTA_072020	B8MSN4	B8LTX8	Enhancer of polycomb-like protein.	DNA methyltransferase 1-associated protein DMAP1.	0.994
TSTA_005090	TSTA_073670	B8MSN4	B8LVG0	Enhancer of polycomb-like protein.	Uncharacterized protein.	0.876
TSTA_005090	TSTA_078040	B8MSN4	B8LWP5	Enhancer of polycomb-like protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.945
TSTA_005090	TSTA_088360	B8MSN4	B8M2D6	Enhancer of polycomb-like protein.	Uncharacterized protein.	0.989
TSTA_018630	TSTA_073670	B8MGP5	B8LVG0	Transcriptional regulator Ngg1, putative.	Uncharacterized protein.	0.891
TSTA_018630	TSTA_087620	B8MGP5	B8M262	Transcriptional regulator Ngg1, putative.	SAGA complex component (Sgf29), putative.	0.995
TSTA_018630	TSTA_088360	B8MGP5	B8M2D6	Transcriptional regulator Ngg1, putative.	Uncharacterized protein.	0.447
TSTA_058770	TSTA_073670	B8MQI7	B8LVG0	Transcription initiation factor iif, beta subunit.	Uncharacterized protein.	0.917
TSTA_058770	TSTA_089590	B8MQI7	B8LZG9	Transcription initiation factor iif, beta subunit.	DNA-directed RNA polymerase II subunit RPB11a, putative.	0.987
TSTA_058770	TSTA_096530	B8MQI7	B8M3N2	Transcription initiation factor iif, beta subunit.	RNA polymerase II subunit 3.	0.996
TSTA_058770	TSTA_104160	B8MQI7	B8MNV7	Transcription initiation factor iif, beta subunit.	Transcription initiation factor IIF subunit alpha, putative.	0.998
TSTA_072020	TSTA_005090	B8LTX8	B8MSN4	DNA methyltransferase 1-associated protein DMAP1.	Enhancer of polycomb-like protein.	0.994
TSTA_072020	TSTA_073670	B8LTX8	B8LVG0	DNA methyltransferase 1-associated protein DMAP1.	Uncharacterized protein.	0.918
TSTA_072020	TSTA_078040	B8LTX8	B8LWP5	DNA methyltransferase 1-associated protein DMAP1.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.991
TSTA_072020	TSTA_088360	B8LTX8	B8M2D6	DNA methyltransferase 1-associated protein DMAP1.	Uncharacterized protein.	0.989
TSTA_073670	TSTA_005090	B8LVG0	B8MSN4	Uncharacterized protein.	Enhancer of polycomb-like protein.	0.876
TSTA_073670	TSTA_018630	B8LVG0	B8MGP5	Uncharacterized protein.	Transcriptional regulator Ngg1, putative.	0.891
TSTA_073670	TSTA_058770	B8LVG0	B8MQI7	Uncharacterized protein.	Transcription initiation factor iif, beta subunit.	0.917
TSTA_073670	TSTA_072020	B8LVG0	B8LTX8	Uncharacterized protein.	DNA methyltransferase 1-associated protein DMAP1.	0.918
TSTA_073670	TSTA_078040	B8LVG0	B8LWP5	Uncharacterized protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.865