STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSTA_026740Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family. (522 aa)    
Predicted Functional Partners:
TSTA_088830
Ras GTPase Rab11, putative.
   
 0.962
TSTA_055410
RAS small monomeric GTPase Rab6, putative.
   
 0.962
TSTA_045710
Secretion related GTPase SrgB/Ypt1.
    
 0.947
TSTA_103530
Anucleate primary sterigmata (ApsB), putative.
    
 0.937
TSTA_121310
Rab GTPase SrgA, putative.
   
 0.935
TSTA_121320
Uncharacterized protein.
   
 0.935
TSTA_066800
Rab small monomeric GTPase Rab7, putative.
    
 0.930
TSTA_027680
Rho-like small GTPase, putative.
    
 0.930
TSTA_032180
RAB GTPase Vps21/Ypt51, putative.
    
 0.867
TSTA_063900
BZIP transcription factor (Atf21), putative.
    
 0.866
Your Current Organism:
Talaromyces stipitatus
NCBI taxonomy Id: 441959
Other names: T. stipitatus ATCC 10500, Talaromyces stipitatus ATCC 10500
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