STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSTA_035970U1 small nuclear ribonucleoprotein A, putative. (180 aa)    
Predicted Functional Partners:
TSTA_064320
Small nuclear ribonucleoprotein U2, A.
   
 0.996
TSTA_064110
Small nuclear ribonucleoprotein Sm D2.
   
 0.995
TSTA_039020
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.995
TSTA_012540
Small nuclear ribonucleoprotein G.
   
 0.995
TSTA_126330
Small nuclear ribonucleoprotein SmF, putative.
   
 0.994
TSTA_115730
Splicing factor 3a subunit 3, putative.
   
 0.991
TSTA_069000
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.985
TSTA_119610
Cell cycle control protein (Cwf2), putative.
    
 0.985
TSTA_011160
U5 snRNP component Snu114, putative.
   
 
 0.983
TSTA_070010
mRNA splicing factor (Prp1/Zer1), putative.
   
 
 0.982
Your Current Organism:
Talaromyces stipitatus
NCBI taxonomy Id: 441959
Other names: T. stipitatus ATCC 10500, Talaromyces stipitatus ATCC 10500
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