STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSTA_121840Pseudouridylate synthase family protein. (483 aa)    
Predicted Functional Partners:
TSTA_087300
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.999
TSTA_114870
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.999
TSTA_118350
Ribosome biogenesis protein nop10, putative.
   
 0.998
TSTA_085740
Fibrillarin.
   
 
 0.997
TSTA_035260
Pre-rRNA processing nucleolar protein Sik1, putative.
   
 
 0.996
TSTA_027740
Nucleolar protein nop5.
  
 
 0.994
TSTA_087010
snoRNP assembly factor Naf1, putative.
   
 
 0.988
TSTA_056660
Uncharacterized protein.
    
 0.988
TSTA_010210
RNA helicase.
  
 
 0.987
TSTA_033940
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.986
Your Current Organism:
Talaromyces stipitatus
NCBI taxonomy Id: 441959
Other names: T. stipitatus ATCC 10500, Talaromyces stipitatus ATCC 10500
Server load: medium (50%) [ZH]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.