STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USB1U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (500 aa)    
Predicted Functional Partners:
TSTA_063690
Cell cycle control protein (Cwf8), putative.
    
   0.915
TSTA_067040
DNA repair and transcription protein (Xab2), putative.
    
 
 0.784
TSTA_074920
mRNA splicing protein (Prp5), putative.
    
   0.762
TSTA_092120
Cell division control protein (Cdc5), putative.
    
   0.753
TSTA_075330
G-patch domain protein, putative.
    
   0.608
TSTA_116540
Transcriptional regulator Cwf13/SkiP, putative.
    
 
 0.601
TSTA_096700
Peptidyl prolyl cis-trans isomerase Cyclophilin, putative.
    
   0.587
TSTA_072820
BCAS2 family protein.
    
   0.580
TSTA_076100
Cell cycle control protein (Cwf19), putative.
    
   0.579
TSTA_073650
Uncharacterized protein.
    
   0.561
Your Current Organism:
Talaromyces stipitatus
NCBI taxonomy Id: 441959
Other names: T. stipitatus ATCC 10500, Talaromyces stipitatus ATCC 10500
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