TSTA_014140 protein (Talaromyces stipitatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TSTA_014140

Uncharacterized protein. (237 aa)

Predicted Functional Partners:

TSTA_100120

0.556

TSTA_032650

0.532

TSTA_076390

0.519

TSTA_037460

0.510

TSTA_120280

0.506

TSTA_119380

0.496

TSTA_036470

0.493

TSTA_070600

0.466

TSTA_019830

0.447

TSTA_087550

0.440

Your Current Organism:

Talaromyces stipitatus

NCBI taxonomy Id: 441959
Other names: T. stipitatus ATCC 10500, Talaromyces stipitatus ATCC 10500

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TSTA_014140	TSTA_019830	B8MGT7	B8MEP0	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.447
TSTA_014140	TSTA_032650	B8MGT7	B8M849	Uncharacterized protein.	Ribosomal protein L16a; Belongs to the universal ribosomal protein uL13 family.	0.532
TSTA_014140	TSTA_036470	B8MGT7	B8M8A9	Uncharacterized protein.	Proteasome regulatory particle subunit (RpnK), putative.	0.493
TSTA_014140	TSTA_037460	B8MGT7	B8M8L3	Uncharacterized protein.	50S ribosomal protein L13.	0.510
TSTA_014140	TSTA_070600	B8MGT7	B8LTQ8	Uncharacterized protein.	Cyclin dependent kinase inhibitor Pho81, putative.	0.466
TSTA_014140	TSTA_076390	B8MGT7	B8LWG0	Uncharacterized protein.	50S ribosomal protein L2.	0.519
TSTA_014140	TSTA_087550	B8MGT7	B8M255	Uncharacterized protein.	Nuclear protein, putative.	0.440
TSTA_014140	TSTA_100120	B8MGT7	B8MML2	Uncharacterized protein.	60S ribosomal protein L21, putative.	0.556
TSTA_014140	TSTA_119380	B8MGT7	B8MBP1	Uncharacterized protein.	60S ribosomal protein L8, putative.	0.496
TSTA_014140	TSTA_120280	B8MGT7	B8MDQ0	Uncharacterized protein.	Ribosomal protein L39e, putative.	0.506
TSTA_019830	TSTA_014140	B8MEP0	B8MGT7	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.447
TSTA_019830	TSTA_070600	B8MEP0	B8LTQ8	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Cyclin dependent kinase inhibitor Pho81, putative.	0.449
TSTA_032650	TSTA_014140	B8M849	B8MGT7	Ribosomal protein L16a; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.532
TSTA_032650	TSTA_076390	B8M849	B8LWG0	Ribosomal protein L16a; Belongs to the universal ribosomal protein uL13 family.	50S ribosomal protein L2.	0.989
TSTA_032650	TSTA_087550	B8M849	B8M255	Ribosomal protein L16a; Belongs to the universal ribosomal protein uL13 family.	Nuclear protein, putative.	0.992
TSTA_032650	TSTA_100120	B8M849	B8MML2	Ribosomal protein L16a; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L21, putative.	0.999
TSTA_032650	TSTA_119380	B8M849	B8MBP1	Ribosomal protein L16a; Belongs to the universal ribosomal protein uL13 family.	60S ribosomal protein L8, putative.	0.999
TSTA_032650	TSTA_120280	B8M849	B8MDQ0	Ribosomal protein L16a; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein L39e, putative.	0.999
TSTA_036470	TSTA_014140	B8M8A9	B8MGT7	Proteasome regulatory particle subunit (RpnK), putative.	Uncharacterized protein.	0.493
TSTA_036470	TSTA_070600	B8M8A9	B8LTQ8	Proteasome regulatory particle subunit (RpnK), putative.	Cyclin dependent kinase inhibitor Pho81, putative.	0.472