TSTA_000900 protein (Talaromyces stipitatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TSTA_000900

GFA domain-containing protein. (180 aa)

Predicted Functional Partners:

TSTA_035840

0.958

TSTA_071760

0.845

TSTA_038550

0.804

TSTA_039610

0.804

TSTA_075910

0.740

TSTA_078290

0.721

TSTA_094430

0.721

TSTA_103250

0.721

TSTA_049170

0.712

TSTA_103060

0.712

Your Current Organism:

Talaromyces stipitatus

NCBI taxonomy Id: 441959
Other names: T. stipitatus ATCC 10500, Talaromyces stipitatus ATCC 10500

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TSTA_000900	TSTA_035840	B8MSV9	B8M7D7	GFA domain-containing protein.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.958
TSTA_000900	TSTA_038550	B8MSV9	B8M3Q6	GFA domain-containing protein.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.804
TSTA_000900	TSTA_039610	B8MSV9	B8M422	GFA domain-containing protein.	Aconitase family protein.	0.804
TSTA_000900	TSTA_049170	B8MSV9	B8MLE5	GFA domain-containing protein.	Hydroxymethylglutaryl-CoA lyase.	0.712
TSTA_000900	TSTA_071760	B8MSV9	B8LTV0	GFA domain-containing protein.	Mitochondrial acetolactate synthase small subunit, putative.	0.845
TSTA_000900	TSTA_075910	B8MSV9	B8LVT9	GFA domain-containing protein.	Alpha-ketoglutarate dehydrogenase complex subunit Kgd1, putative.	0.740
TSTA_000900	TSTA_078290	B8MSV9	B8LWR9	GFA domain-containing protein.	Homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.	0.721
TSTA_000900	TSTA_094430	B8MSV9	B8M2U2	GFA domain-containing protein.	2-isopropylmalate synthase.	0.721
TSTA_000900	TSTA_103060	B8MSV9	B8MNJ0	GFA domain-containing protein.	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase.	0.712
TSTA_000900	TSTA_103250	B8MSV9	B8MNL2	GFA domain-containing protein.	Uncharacterized protein.	0.721
TSTA_035840	TSTA_000900	B8M7D7	B8MSV9	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	GFA domain-containing protein.	0.958
TSTA_035840	TSTA_038550	B8M7D7	B8M3Q6	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.	0.804
TSTA_035840	TSTA_039610	B8M7D7	B8M422	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Aconitase family protein.	0.804
TSTA_035840	TSTA_049170	B8M7D7	B8MLE5	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Hydroxymethylglutaryl-CoA lyase.	0.712
TSTA_035840	TSTA_071760	B8M7D7	B8LTV0	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Mitochondrial acetolactate synthase small subunit, putative.	0.855
TSTA_035840	TSTA_075910	B8M7D7	B8LVT9	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Alpha-ketoglutarate dehydrogenase complex subunit Kgd1, putative.	0.954
TSTA_035840	TSTA_078290	B8M7D7	B8LWR9	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.	0.734
TSTA_035840	TSTA_094430	B8M7D7	B8M2U2	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	2-isopropylmalate synthase.	0.728
TSTA_035840	TSTA_103060	B8M7D7	B8MNJ0	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase.	0.712
TSTA_035840	TSTA_103250	B8M7D7	B8MNL2	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Uncharacterized protein.	0.732