STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMAA_079600Polyubiquitin binding protein (Doa1/Ufd3), putative. (790 aa)    
Predicted Functional Partners:
PMAA_051430
Endoplasmic reticulum and nuclear membrane proteinc Npl4, putative.
   
 
 0.984
PMAA_034270
Cell division control protein Cdc48; Belongs to the AAA ATPase family.
   
 
 0.983
PMAA_095160
Ubiquitin fusion degradation protein Ufd1, putative.
   
 
 0.983
PMAA_005130
OTU-like cysteine protease, putative.
    
 
 0.982
PMAA_082720
Cdc48-dependent protein degradation adaptor protein (Shp1), putative.
    
 
 0.980
PMAA_065600
UBX domain protein.
   
 
 0.919
PMAA_040320
Polyubiquitin UbiD/Ubi4, putative.
    
 0.910
PMAA_086030
Ubiquitin fusion degradation protein (Ufd1), putative.
   
 
 0.877
PMAA_086180
AAA family ATPase, putative.
   
 
 0.867
PMAA_068480
Membrane-tethered transcription factor (SPT23), putative.
    
   0.797
Your Current Organism:
Talaromyces marneffei
NCBI taxonomy Id: 441960
Other names: Penicillium marneffei ATCC 18224, T. marneffei ATCC 18224, Talaromyces marneffei ATCC 18224
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.