STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMAA_040060Transcription factor, putative. (685 aa)    
Predicted Functional Partners:
PMAA_037530
CCR4-NOT core complex subunit Caf1, putative.
    
 0.998
PMAA_020300
Ccr4-Not transcription complex subunit (NOT1), putative.
   
 0.998
PMAA_043520
Cell differentiation protein (Rcd1), putative.
    
 0.996
PMAA_064610
CCR4-NOT core complex subunit Not4, putative.
    
 0.995
PMAA_089540
CCR4-NOT transcription complex, subunit 3.
    
 0.991
PMAA_005210
DEAD-box RNA helicase Dhh1/Vad1, putative; Belongs to the DEAD box helicase family.
    
 0.982
PMAA_048350
NOT2 family protein.
    
 0.959
PMAA_048410
Pol II transcription elongation factor subunit Cdc73, putative.
   
 
 0.957
PMAA_074330
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.951
PMAA_048050
Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.
    
   0.951
Your Current Organism:
Talaromyces marneffei
NCBI taxonomy Id: 441960
Other names: Penicillium marneffei ATCC 18224, T. marneffei ATCC 18224, Talaromyces marneffei ATCC 18224
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.