PMAA_008850 protein (Talaromyces marneffei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PMAA_008850

ELYS domain-containing protein. (309 aa)

Predicted Functional Partners:

PMAA_077790

0.998

PMAA_042580

0.991

PMAA_028360

0.988

PMAA_028080

0.981

PMAA_010400

0.974

PMAA_048440

0.973

PMAA_049140

0.967

PMAA_086070

0.960

PMAA_035530

0.855

PMAA_041030

0.855

Your Current Organism:

Talaromyces marneffei

NCBI taxonomy Id: 441960
Other names: Penicillium marneffei ATCC 18224, T. marneffei ATCC 18224, Talaromyces marneffei ATCC 18224

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PMAA_008850	PMAA_010400	B6QUD6	B6QUV2	ELYS domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.974
PMAA_008850	PMAA_028080	B6QUD6	B6Q2M6	ELYS domain-containing protein.	Nuclear pore complex subunit (SEC13), putative; Belongs to the WD repeat SEC13 family.	0.981
PMAA_008850	PMAA_028360	B6QUD6	B6Q2R3	ELYS domain-containing protein.	Nuclear pore complex subunit Nup133, putative.	0.988
PMAA_008850	PMAA_035530	B6QUD6	B6Q7M4	ELYS domain-containing protein.	Nucleoporin NUP49/NSP49, putative.	0.855
PMAA_008850	PMAA_041030	B6QUD6	B6QQD0	ELYS domain-containing protein.	Nucleoporin SONB, putative.	0.855
PMAA_008850	PMAA_042580	B6QUD6	B6QQM9	ELYS domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.991
PMAA_008850	PMAA_048440	B6QUD6	B6QRN5	ELYS domain-containing protein.	Nuclear pore protein (SEH1), putative; Belongs to the WD repeat SEC13 family.	0.973
PMAA_008850	PMAA_049140	B6QUD6	B6QRU9	ELYS domain-containing protein.	Non-repetitive nucleoporin, putative.	0.967
PMAA_008850	PMAA_077790	B6QUD6	B6QD98	ELYS domain-containing protein.	RanBP1 domain protein.	0.998
PMAA_008850	PMAA_086070	B6QUD6	B6QGN2	ELYS domain-containing protein.	Nuclear pore protein (Nic96), putative.	0.960
PMAA_010400	PMAA_008850	B6QUV2	B6QUD6	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	ELYS domain-containing protein.	0.974
PMAA_010400	PMAA_028080	B6QUV2	B6Q2M6	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex subunit (SEC13), putative; Belongs to the WD repeat SEC13 family.	0.999
PMAA_010400	PMAA_028360	B6QUV2	B6Q2R3	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex subunit Nup133, putative.	0.999
PMAA_010400	PMAA_035530	B6QUV2	B6Q7M4	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin NUP49/NSP49, putative.	0.911
PMAA_010400	PMAA_041030	B6QUV2	B6QQD0	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin SONB, putative.	0.911
PMAA_010400	PMAA_042580	B6QUV2	B6QQM9	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
PMAA_010400	PMAA_048440	B6QUV2	B6QRN5	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore protein (SEH1), putative; Belongs to the WD repeat SEC13 family.	0.999
PMAA_010400	PMAA_049140	B6QUV2	B6QRU9	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Non-repetitive nucleoporin, putative.	0.998
PMAA_010400	PMAA_077790	B6QUV2	B6QD98	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	RanBP1 domain protein.	0.999
PMAA_010400	PMAA_086070	B6QUV2	B6QGN2	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore protein (Nic96), putative.	0.998