STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH15852.1Galactarate dehydratase. (522 aa)    
Predicted Functional Partners:
SFH15873.1
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.968
SFI22248.1
Tagaturonate reductase.
 
 0.925
SFH63698.1
Glucarate dehydratase-related protein.
 
 
 0.862
SFI08304.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  0.825
SFH23535.1
2-dehydro-3-deoxygalactonokinase.
  
  
  0.814
SFH77873.1
2-deoxy-D-gluconate 3-dehydrogenase.
  
  
  0.803
SFH31488.1
Mannitol 2-dehydrogenase.
 
 0.773
SFI08371.1
2-dehydro-3-deoxygluconokinase.
 
  
 0.754
SFH63683.1
Dihydrodipicolinate synthetase family protein.
    
 0.721
SFH63790.1
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
    
 0.721
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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