STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH28609.1Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. (306 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.855
SFI03184.1
AraC-type DNA-binding protein.
  
   0.768
SFH20664.1
Helix-turn-helix domain-containing protein.
  
   0.761
SFH70030.1
AraC-type DNA-binding protein.
  
   0.747
SFH92990.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
     0.687
SFH93009.1
Sarcosine oxidase subunit delta.
 
     0.667
SFH93028.1
Sarcosine oxidase subunit beta.
  
  
  0.635
SFH28624.1
Protein of unknown function.
       0.628
fabV
Enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+); Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family.
       0.624
SFH92973.1
Sarcosine oxidase subunit gamma.
 
    0.616
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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