STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH58466.1Type I restriction enzyme M protein. (757 aa)    
Predicted Functional Partners:
SFH58482.1
Type I restriction enzyme, S subunit.
 
 0.999
SFH58512.1
Type I restriction enzyme, R subunit.
 
 
 0.999
SFI01611.1
Hypothetical protein.
  
 
 0.990
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
 
 0.891
SFH51988.1
Fic/DOC family protein.
  
    0.875
SFH44850.1
Flagellar protein FlaG.
    
   0.874
SFI01256.1
Hypothetical protein.
  
  
 0.852
SFH58497.1
DNA-damage-inducible protein D.
 
     0.820
SFH58447.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
       0.778
SFH58527.1
Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains.
 
   
 0.752
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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