STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
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[Homology]
Score
SFH92368.1Putative Zn-dependent protease, contains TPR repeats; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state. (481 aa)    
Predicted Functional Partners:
SFH59155.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
 
   0.848
SFH74338.1
LysM domain-containing protein.
   
   0.803
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.734
SFH92326.1
Putative permease.
       0.586
SFH92346.1
Sulfurtransferase TusA; Belongs to the sulfur carrier protein TusA family.
       0.586
SFH66382.1
Tetratricopeptide repeat-containing protein.
  
     0.560
SFH79365.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
  
 0.555
bamA
Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.554
SFH59947.1
Methyl-accepting chemotaxis sensory transducer.
    
  0.520
SFH59973.1
Methyl-accepting chemotaxis sensory transducer with Cache sensor.
    
  0.520
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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