STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI07081.1Hypothetical protein. (324 aa)    
Predicted Functional Partners:
SFI07104.1
TRAP transporter, 4TM/12TM fusion protein.
 
  0.997
SFI03070.1
TRAP transporter, 4TM/12TM fusion protein.
 
  0.960
SFH53857.1
TRAP transporter, 4TM/12TM fusion protein.
 
  0.955
SFI07020.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
  0.922
SFI07045.1
TRAP transporter, DctM subunit.
    
  0.910
SFI06991.1
Tripartite ATP-independent transporter solute receptor, DctP family.
    
  0.905
SFI07129.1
Nucleotide-binding universal stress protein, UspA family.
 
     0.822
SFH16096.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
 
  0.662
SFH81422.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
  
  0.551
SFI17991.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
  
  0.510
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.