STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI07206.1Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (279 aa)    
Predicted Functional Partners:
SFH45329.1
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.745
SFH59831.1
Amino acid ABC transporter membrane protein 2, PAAT family.
   
 
  0.640
SFH23376.1
Amino acid ABC transporter membrane protein, PAAT family.
   
 
  0.638
SFH57986.1
Amino acid ABC transporter membrane protein, PAAT family.
   
 
  0.638
SFI22855.1
Fatty-acid peroxygenase.
    
 0.610
SFI07226.1
TM2 domain-containing membrane protein YozV.
       0.608
SFH19302.1
O-methyltransferase.
  
  
 0.597
SFH43804.1
Xanthine dehydrogenase, molybdenum binding subunit apoprotein.
    
 0.587
argD
acetylornithine/N-succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
     
 0.557
SFI07246.1
Threonine/homoserine/homoserine lactone efflux protein.
       0.543
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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