STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI08957.1Sigma-54 specific transcriptional regulator. (517 aa)    
Predicted Functional Partners:
SFH79365.1
Two-component system, NarL family, sensor histidine kinase BarA.
    
 0.897
SFH67043.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.871
SFI08852.1
FHA domain protein.
     
 0.867
SFH91837.1
PAS domain S-box-containing protein.
    
 0.862
SFI08935.1
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
       0.862
SFI08981.1
Type VI secretion system protein VasI.
      0.862
SFI08869.1
Type VI secretion system protein VasD.
       0.856
SFI08886.1
Type VI secretion system protein ImpJ.
       0.856
SFI08820.1
Type VI secretion system protein ImpG.
       0.830
SFI08836.1
Type VI secretion system protein ImpH.
       0.830
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.