STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI11448.1TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (361 aa)    
Predicted Functional Partners:
SFH60747.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.931
SFH54365.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.929
SFH54346.1
TRAP transporter, DctM subunit.
 
 
  0.910
SFH60729.1
TRAP transporter, DctM subunit.
 
 
  0.910
SFI22881.1
TRAP transporter, DctM subunit.
 
 
  0.908
SFH63749.1
TRAP transporter, DctM subunit.
 
 
  0.906
SFH84340.1
Tripartite ATP-independent transporter, DctM component.
 
 
  0.800
SFH87520.1
TRAP transporter, DctM subunit.
  
  
  0.712
SFI11399.1
ATP-dependent DNA helicase UvrD.
       0.712
SFH81379.1
TRAP transporter, DctM subunit.
  
  
  0.677
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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