STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI13063.1Cytochrome c-type biogenesis protein. (247 aa)    
Predicted Functional Partners:
SFI13026.1
Thiol-disulfide isomerase or thioredoxin.
 
  
 0.931
SFI13101.1
Cytochrome C oxidase, cbb3-type, subunit III.
 
     0.801
SFI13081.1
Uncharacterized protein.
       0.784
SFI10451.1
Thiol-disulfide isomerase or thioredoxin.
 
  
 0.760
SFI13046.1
Hypothetical protein.
       0.752
SFI13004.1
Uncharacterized conserved protein.
       0.685
SFI12805.1
Zinc transporter, ZIP family.
   
    0.656
SFI12981.1
Protein SCO1/2.
 
    0.637
SFI21455.1
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
 
  
 0.624
SFH52728.1
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
 
  
 0.570
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.