STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI18567.1DNA-binding transcriptional regulator, FadR family. (281 aa)    
Predicted Functional Partners:
SFH16039.1
DNA-binding transcriptional regulator, FadR family.
  
     0.769
SFI05024.1
DNA-binding transcriptional regulator, GntR family.
  
    0.711
SFI09190.1
DNA-binding transcriptional regulator, GntR family.
  
    0.635
SFI18584.1
Acetylornithine deacetylase.
       0.615
SFI06331.1
Transcriptional regulator, GntR family.
  
    0.604
SFH43738.1
DNA-binding transcriptional regulator, GntR family.
  
    0.590
SFH59427.1
DNA-binding transcriptional regulator, GntR family.
  
    0.584
SFH39969.1
DNA-binding transcriptional regulator, GntR family.
  
    0.564
SFH19758.1
Hypothetical protein.
    
  0.517
SFH31873.1
Vanillate O-demethylase ferredoxin subunit.
    
  0.517
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.