Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFH23330.1 | SFH83051.1 | SAMN04487959_101359 | SAMN04487959_11082 | Sucrose phosphorylase. | Maltokinase. | 0.980 |
SFH23330.1 | SFI20658.1 | SAMN04487959_101359 | SAMN04487959_12910 | Sucrose phosphorylase. | Amino acid permease. | 0.983 |
SFH70458.1 | SFI20658.1 | SAMN04487959_10846 | SAMN04487959_12910 | PhoP regulatory network protein YrbL. | Amino acid permease. | 0.904 |
SFH83051.1 | SFH23330.1 | SAMN04487959_11082 | SAMN04487959_101359 | Maltokinase. | Sucrose phosphorylase. | 0.980 |
SFH83051.1 | SFI20658.1 | SAMN04487959_11082 | SAMN04487959_12910 | Maltokinase. | Amino acid permease. | 0.983 |
SFH83051.1 | glgE | SAMN04487959_11082 | SAMN04487959_11081 | Maltokinase. | Starch synthase (maltosyl-transferring); Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. | 0.999 |
SFI01782.1 | SFI20658.1 | SAMN04487959_114145 | SAMN04487959_12910 | Copper-resistance protein, CopA family. | Amino acid permease. | 0.537 |
SFI19930.1 | SFI20658.1 | SAMN04487959_1286 | SAMN04487959_12910 | Chorismate mutase. | Amino acid permease. | 0.656 |
SFI19930.1 | aroE | SAMN04487959_1286 | SAMN04487959_102202 | Chorismate mutase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.969 |
SFI19930.1 | nadE-2 | SAMN04487959_1286 | SAMN04487959_11812 | Chorismate mutase. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.804 |
SFI20658.1 | SFH23330.1 | SAMN04487959_12910 | SAMN04487959_101359 | Amino acid permease. | Sucrose phosphorylase. | 0.983 |
SFI20658.1 | SFH70458.1 | SAMN04487959_12910 | SAMN04487959_10846 | Amino acid permease. | PhoP regulatory network protein YrbL. | 0.904 |
SFI20658.1 | SFH83051.1 | SAMN04487959_12910 | SAMN04487959_11082 | Amino acid permease. | Maltokinase. | 0.983 |
SFI20658.1 | SFI01782.1 | SAMN04487959_12910 | SAMN04487959_114145 | Amino acid permease. | Copper-resistance protein, CopA family. | 0.537 |
SFI20658.1 | SFI19930.1 | SAMN04487959_12910 | SAMN04487959_1286 | Amino acid permease. | Chorismate mutase. | 0.656 |
SFI20658.1 | SFI20792.1 | SAMN04487959_12910 | SAMN04487959_12916 | Amino acid permease. | Phosphoribosyl synthetase-associated domain-containing protein. | 0.615 |
SFI20658.1 | aroE | SAMN04487959_12910 | SAMN04487959_102202 | Amino acid permease. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.625 |
SFI20658.1 | glgE | SAMN04487959_12910 | SAMN04487959_11081 | Amino acid permease. | Starch synthase (maltosyl-transferring); Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. | 0.983 |
SFI20658.1 | kdkA | SAMN04487959_12910 | SAMN04487959_10669 | Amino acid permease. | 3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. | 0.904 |
SFI20658.1 | nadE-2 | SAMN04487959_12910 | SAMN04487959_11812 | Amino acid permease. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.712 |
page 1 of 2