STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI24349.1C4-dicarboxylate transporter, DctM subunit. (450 aa)    
Predicted Functional Partners:
SFI24393.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.967
SFI18321.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
 
  0.910
SFI18243.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.905
SFI18259.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.900
SFI16436.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
 
  0.870
SFH31893.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
 
  0.857
SFI08424.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
  0.856
SFI06376.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
  0.851
SFI04825.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
  0.846
SFI06991.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
  0.845
Your Current Organism:
Halomonas xianhensis
NCBI taxonomy Id: 442341
Other names: CGMCC 1.6848, H. xianhensis, Halomonas sp. A-1, Halomonas xianhensis Zhao et al. 2012, JCM 14849, strain A-1
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